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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST004563
species:
Oryza sativa
miRNA family:
MIRf34
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AATGACTTACGTTGTGAACCG
miRNA*
TTTCACAATGTAAGTCATTCT
mismatches:
2
bulges:
0
View larger
pre-miRNA
TTTCACAATGCCA
TTTCACAATGTAAGTCATTCT
AACATTTCCCACATTCATATTTATGTAGTAGATTCATTAACATCAATATGAATATGAGAAATGCTA
GAAACATTTCCCACATTCATATTTATGTTAATGAATCTAGATAGATACATTAACATCAATATGAATATGAGAAATGCTAG
AATGACTTACGTTGTGAACC
G
GAGGGAGTAT
dot-bracket secondary structure
.(((......((.
.((((((((((((((((((((
(.((((((.((.(((((((((.((((..(((((((((((((((.(((((((((.((.((((((...
....)))))).)).))))))))).)))))))))))))))(((......))).)))).))))))))).)).)))))).)))
))))))))))))))))))..
)
)...)))...
SIMILARITIES
miRBase
osa-MIR809b
:
9e-28
PMRD
osa-miR809b
:
9e-28
microPC
miR446
:
1e-23
UniProt
no hits
RFAM
MIR1122: 1e-30
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record